- AbstractGraph
- AbstractTypedGraph
- Algorithm
- Algorithm.GraphSortOrder
- ArgumentsBundle
- ArgumentsBundle.COMMON_ARGS
- BatchProcessor
- BetweennessCentrality
- BinarySearchTree
- BipartiteCondition
- BreadthFirstTraversalSearch
- BronKerbosch
- BronKerboschBipartiteUtils
- Bundle
- CliqueCondition
- ClusteringAlgorithm
- CommonMatcher
- CommonPattern
- CommunicationListener
- Communicator
- Communities
- Condition
- ConditionedGraph
- ConnectedComponentsDFS
- CygrouperAssembler
- CygrouperEdge
- CygrouperNode
- CytogrouperMain
- DepthFirstTraversalSearch
- DijkstraShortestPath
- DirectedCliqueCondition
- DisjointSet
- Edge
- EdgeBetweennessClusterer
- EdgeScorer
- EdgeType
- EdgeWeightComparator
- FastGreedy
- Function
- Functions
- Functions.ConstantFunction
- Functions.ForMapWithDefault
- Functions.FunctionComposition
- Functions.FunctionForMapNoDefault
- Functions.IdentityFunction
- Functions.PredicateFunction
- Functions.SupplierFunction
- Functions.ToStringFunction
- GirvanNewman
- Global
- Graph
- Graph
- GraphAverageWeight
- GraphAverageWeightComparator
- GraphReader
- GraphSizeComparator
- GraphWriter
- HeapNodeFG
- HeapNodeWT
- Hypergraph
- IndexedHeapNode
- IndexedHeapQueue
- JdkPattern
- JdkPattern.JdkMatcher
- Kruskal
- LogLevel
- LogType
- LogUtil
- Main
- ManifestParser
- MapBinaryHeap
- MatrixPatternAnalyzer
- NOABatchIO
- Node
- Pair
- Preconditions
- Predicate
- Predicates
- Predicates.AndPredicate
- Predicates.CompositionPredicate
- Predicates.ContainsPatternPredicate
- Predicates.InPredicate
- Predicates.InstanceOfPredicate
- Predicates.IsEqualToPredicate
- Predicates.NotPredicate
- Predicates.ObjectPredicate
- Predicates.OrPredicate
- Predicates.SubtypeOfPredicate
- Prim
- PrioritySet
- Processable
- ShortestPath
- SIFGraphIO
- SimpleGraphIO
- SparseGraph
- SparseMatrix
- TreeNode
- TreeNodeInfo
- TreeNodeInfoFG
- UndirectedGraph
- UndirectedSparseGraph
- VectorValue
- VertexScorer
- Walktrap
- WeakComponentClusterer